PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 181aa    MW: 20055 Da    PI: 8.192
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006051genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.61.1e-3879170284
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceae 76 
                           a+k ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt                    ++  +
  PGSC0003DMP400006051  79 AKKPTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTegqwgmltaamnsyR-----QSGGH 162
                           78999***********************************************************877766543222210.....12122 PP

                   TCP  77 sssssasn 84 
                           +s ss+++
  PGSC0003DMP400006051 163 ASGSSNQH 170
                           22222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3383170IPR005333Transcription factor, TCP
PROSITE profilePS5136927.63685139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MENVHHHHDH DNIGNSIQRP NFPLQLLEKR DQVDHSTICS SQVHPYNSTS LHMMTTSSSD  60
APCVDHNQKS KNQDKKQQAK KPTTTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS  120
DGETIEWLLQ QAEPAVIAAT GTEGQWGMLT AAMNSYRQSG GHASGSSNQH NGGDDHQHHS  180
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1492900.0AC149290.1 Solanum demissum chromosome 5 clone PGEC093P17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363220.16e-94PREDICTED: transcription factor TCP15-like
SwissprotQ9C9L23e-39TCP15_ARATH; Transcription factor TCP15
TrEMBLM0ZUZ81e-134M0ZUZ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000087282e-93(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-33TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]